try this. get the microswitch going again and then roll the window down for 10seconds (hold it for 10 seconds) then take it up to the top and hold it for 10 seconds. (do this all while the door is closed)
now try it out..
what your trying to do is allow the car to remember where the windows limits are. i cant remember exactly what the details are of the process but it fixed my problem a few years back.
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