AUTO to Manual Tranny swap is a bitch. Specially for people, who are paying to get the work done. If you are mechanic(Nutty one)then I would understand.
Now, to get it done, you will need the following major replacement with lot of other work.
MANUAL TRANSMISSION
NEW FLYWHEEL with assembly
CLUTCH with assembly
Clutch Cylinder/Master
Clutch fork
Tranny mounts
Modification to fit the third pedal.
Third pedal it self.
Drive shaft
Shifter linkage
Shifter it self with the kit
REAR DIFFERENTIAL which is suitable for MANUAL. The auto differential will be too quick and short. It will make your car jerky and will limit your speed to 90-98MPH since the ratios are too small.
Plus labor for the work.
May be couple things more which I might be forgetting

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